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CLC RNA Workbench 5.4
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CLC Bio (tutti i prodotti) Lingua : Ing | S.O. : Win, Mac, Linux

 

An advanced workbench for RNA analysis

The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms.

CLC RNA Workbench is available on Windows, Mac OS X, and Linux platforms.


These are the top five reasons to try CLC RNA Workbench

Product features

CLC RNA Workbench includes the following features:

Bioinformatics features in CLC RNA Workbench

Pattern search

Project and data management

Other bioinformatics features

Database searches

 

New Features

For the latest improvements please visit the CLC Bio WebSite...

Compare products & features

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Core software features
 Data management
 Printing and reporting
 Import and export
 History
 Batch processing
 Customize solutions

Next Gen. Sequencing
 Genomics
 Transcriptomics
 Epigenomics
Chromatin immunoprecipitation sequencing analysis
Peak finding and peak refinement
Graph and table of background distribution and false discovery rate
Peak table and annotations

 General NGS features

Other Bioinformatics features
 RNA secondary structure
 BLAST searches
 Other database searches
 Protein analyses
 Dot plots
 Primer design
 Assembly of Sanger sequencing data
 Molecular cloning
 Virtual gel viewer
 Pattern discovery
 General sequence analyses
 Nucleotide analyses
 Sequence alignment
 Phylogenetic trees

 

System Requirements

System requirements for all workbenches from CLC bio

  • Mac OS X 10.4 or later (including Intel-based Macs)
  • Windows 2000, Windows XP, Windows Vista, or Windows 7
  • Linux: Redhat or SuSE
  • 256 MB RAM required
  • 2 GB RAM recommended
  • 1024 x 768 display recommended

Additional requirements for CLC Protein Workbench, CLC Main Workbench, & CLC Genomics Workbench

  • 3D viewing requires an OpenGL 3D graphics driver (included with almost all graphics cards)

Special requirements for CLC Genomics Workbench

  • Intel or AMD CPU required
  • 64 bit computer and operating system recommended for more than 2 GB RAM
  • Small data sets:
    Assembly and analysis of genomes up to 50 mega-bases and up to 10 mil. reads
    • 2 GB RAM required
    • 4 GB RAM recommended
  • Medium data sets:
    Assembly and analysis of larger genomes and up to 100 mil. reads
    • 8 GB RAM required
    • 16 GB RAM recommended
  • Large data sets:
    Assembly and analysis of larger genomes and more than 100 mil. reads
    • 16 GB RAM required
    • 32 GB RAM recommended
  • Special requirements for de novo assembly:
    De novo assembly may need more memory than stated above - this depends both on the number of reads and the complexity and size of the genome. See our white paper on de novo assembly for examples of the memory usage of various data sets.

System requirements for CLC License Server

  • Mac OS X 10.4 or Mac OS X 10.5
  • Windows XP, Windows Vista, Windows 7 or Server 2003
  • Linux: Red Hat, Fedora Core or SuSE

Java

The CLC Workbenches are built using Java technology. If you are a Windows or Linux user, the CLC Workbench includes a JRE (Java Runtime Environment) which is needed to run the CLC Workbench. This JRE will not interfere with existing JRE's on your computer and will only be used to run the CLC Workbench.

Mac OS X includes a Java Runtime Environment as default.

Mac and the Mac logo are trademarks of Apple Computer, Inc., registered in the U.S. and other countries. Microsoft, Windows and the Windows logo are either registered trademarks or trademarks of Microsoft Corporation in the United States and other count

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